Open funding:
Open funding:

Addressing pre-analytic variation in digital pathology: U-M and Kenya collaboration

This project tackles the pre-analytic sources of variation that undermine artificial intelligence in pathology when tools trained elsewhere are deployed in new settings. Working from bottlenecks identified by Aga Khan University pathologists in Nairobi, including inconsistent fixation and staining across referring sites, scanner and monitor color variance, slide focus artifacts and a shortage of Kenya-representative digital datasets, the team pairs Aga Khan and Michigan investigators to build quality control, stain normalization and multi-scanner validation into the workflow. A joint steering committee governs the work, and fairness audits at months six and twelve check performance across patient subgroups. The goal is to enable Aga Khan Pathology to deploy digital pathology for primary diagnosis while producing openly documented methods that other institutions can adapt.

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Start Date

February 1, 2026

End Date

January 31, 2028

Location

Kenya

Project Investigators

Ulysses (Ul) Balis, MD

Clinical Professor

Medical School
Pathology
Pathology Informatics
Kamran Mirza, MBBS, PhD

Clinical Professor

Medical School
Pathology
Sophia Brueckner, MFA

Associate Professor

Art and Design
Hosagrahar (Jag) Jagadish, PhD

Professor

College of Engineering
Electrical Engineering and Computer Science
Geoffrey Siwo, PhD

Research Assistant Professor

Medical School
Internal Medicine
Gastroenterology
Shahin Sayed, PhD

Professor, Pathology, Aga Khan University Hospital, Nairobi

Mansoor Saleh, MD

Professor, Haematology-Oncology and Clinical Research Unit, Aga Khan University Hospital, Nairobi

Priscilla Busingye, MBChB

OB/GYN Provider, Rwibaale Health Center IV, Rwibaale, Uganda

Jasmit Shah, PhD

Data Scientist, Brain and Mind Institute, The Aga Khan University, Kenya

Arvind Rao, PhD

Professor

Medical School
Computational Medicine and Bioinformatics

Collaborating Organizations

Aga Khan University
Kenya

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